PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152764001
Common NameGSBRNA2T00152764001, LOC106408982, LOC106408983
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 351aa    MW: 39950 Da    PI: 6.4576
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152764001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.5e-3269122255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  GSBRNA2T00152764001  69 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 122
                          8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-2965123IPR009057Homeodomain-like
PROSITE profilePS5129412.27365125IPR017930Myb domain
SuperFamilySSF466891.97E-1467123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2269124IPR006447Myb domain, plants
PfamPF002491.2E-970121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIPSMDGSGK TTDREEEEEE EEEEEEEEED GEGEGEGEGE ESKVSSNTTV EAEVGKKTKV  60
RPYVRSKVPR LRWTPDLHLR FVRAVERLGG QERATPKLVR QMMNIKGLSI AHVKSHLQMY  120
RSKKMDDQGQ AIGDNRHFIE SSTDRNIYKL SQLPMFRGYN TNHSHDSPFR YGSRFSNASL  180
WNSSSHETNR SLIDRTCLIR GSSVSNNIHG SEYWTNNRSF PNTYSSSVSN HLPKLRHNHQ  240
ERTNLATFNS IQGHSRTFEK FETGIEERTN HVYCNKTTGK RNASTSLDLD LSLKVRVPEE  300
TTLEETETAT TTDQTLSLSL CSWKKSRVIK TDEEDRTVKI GQASTLDLTL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152764001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634096.10.0PREDICTED: putative two-component response regulator ARR20
RefseqXP_013705129.10.0PREDICTED: putative two-component response regulator ARR20
RefseqXP_013705130.10.0PREDICTED: putative two-component response regulator ARR20
TrEMBLA0A078DRB00.0A0A078DRB0_BRANA; BnaC04g07080D protein
TrEMBLA0A0D3BQY80.0A0A0D3BQY8_BRAOL; Uncharacterized protein
STRINGBra005124.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-171G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]